Our laboratory specializes in using fossil and modern diatom assemblages to reconstruct past lake and river environments. Additionally, our research includes diatom taxonomic research from sites around the world, focusing particularly on remote regions and ancient environments. Students across all levels (undergraduate to PhD) do primary research in this lab on diatom-based projects from terrestrial aquatic ecosystems.

Research

Lakes in the Western US: Holocene drought history of the US Rocky Mountains, pollution history of Lake Couer d’Alene, Holocene paleoclimate recontruction of lakes in the Sierra Nevadas, Early Holocene climate evolution of the Greater Yellowstone Ecosystem, diatom taxonomy and evolution in the western US including Miocene-age diatomite deposits, three-dimensional lake modeling and lake level change.

Lakes in the US Midwest: anthropogenic impacts on lakes and wetlands of Indiana, environmental damage and resilience in the Wabash River ecosystem, spatiotemporal variability and drivers of east-west hydroclimate anti-phasing.

Lakes in eastern Africa: Pleistocene paleoclimate history of Lakes Malawi, Tanganyika, Turkana, paleolake Mababe, paleolake Hadar, and the diatomites of the Chemeron formation in the Baringo Basin, taxonomy and diversity of diatoms in eastern Africa, diatom diversity and evolution in the East African Rift Valley.

Lakes in Guatemala: marine incursions in the greater Lake Izabal ecosystem, tectonicallydrive eutrophication events reconstructed from diatoms in Lake Chichoj, Lake Atitlan, Lake Amatitlan, and Lake Ayarza.

*Streib LC, Stone JR, *Parikh H, Scholz C, 2025, Encyonema larvatum sp. nov.: A new species of diatom identified from the Mid-Pleistocene of Lake Malawi, eastern Africa

Domingos-Luz L, Rasbold GG, Ivory SJ, Yost CL, Stone JR, *Adhikari S, Soreghan MJ, Kimirei IA, McGlue MM, 2025, Phytolith and macrocharcoal records from Lake Tanganyika (Africa) reveal high frequency shifts in savanna ecosystem states during the Common Era, GSA Bulletin.

dos Santos CB, Correa IS, Weschenfelder J, Stone JR, accepted, Grain-size parameters and diatom records as indicators of environmental changes along the southern Brazilian coastal plain, International Journal of Sediment Research.

Mohan J, Edlund MB, Burge D, Stone JR, Schlauch Saiyawong J, Otto RE, 2025, Diatom fossils from the Ashfall Fossil Beds, indicate an alluvial mega-fan buried during the wet season by the Bruneau-Jarbidge eruption (∼11.86 ma), PALAIOS 40(3):88–99.

Edlund MB, Ballantine DL, Ruíz H, Stone JR, 2025, A new schizonematous marine diatom from Puerto Rico; Berkeleya witkowskii sp. nov. (Bacillariophyceae; Berkeleyaceae) forms macroscopic floral-shaped colonies, Nova Hedwigia.

Hartung H, Litt T, Stone JR, 2025, Holocene lake-level reconstruction of Lake Kinneret (Israel) based on a quantitative diatom-inferred depth model, Nova Hedwigia.

*Parikh H, Stone JR, Jovanovska E, 2024, Evolution and morphological diversity of the genus Diploneis (Bacillariophyta) in Lake Malawi, with description of six new species, Phycologia 63:462-479.

*Lopera-Congote L, McGlue MM, Yeager K, Westover KS, Stone JR, 2024, Diatom spatial variations in Gull Lake (California) sediments: implications for improving paleolimnological interpretations in small glacial lakes, Hydrobiologia 851:5151–5166.

Gur-Arieh S, Eisenmann S, Henry AG, Lucas M, Lenz D, Paxinos P, Weber H, Morandi L, Stone JR, Schultz M, Roberts P, Stockhammer PW, 2024, Reconstructing dietary practices at Tell Kamid el-Loz (Lebanon) during the Bronze and Iron Age III / Persian to Hellenistic periods using plant micro-remains from dental calculus and stable isotope analysis of bone collagen, Archaeological and Anthropological Sciences, https://doi.org/10.1007/s12520-024-02000-w.

*Lopera-Congote L, McGlue MM, Westover KS, Yeager K, *Streib L, Stone JR, 2024, Detecting climate-driven ecological changes in high-altitude lakes in the Sierra Nevada, California, Holocene, https://doi.org/10.1177/09596836241236324.

Jovanovska E, Stone JR, Wilson MC*, Hamilton PB, 2023, Morphological and molecular characterization of 25 new Diploneis species (Bacillariophyta) from Lake Tanganyika, Phytotaxa 593(1). https://doi.org/10.11646/phytotaxa.593.1.1

*Dilworth J, Stone JR, Yeager KM, Thigpen R, McGlue MM, 2023, Fossil Diatoms Reveal Natural and Anthropogenic History of Jackson Lake (Wyoming, USA), Earth Science, Systems and Society 3:10065. doi: 10.3389/esss.2023.10065

Stone JR, Wilson MC*, Jovanovska E, 2022, The genus Afrocymbella (Bacillariophyceae) from lakes Malawi and Tanganyika, with description of new fossil and extant species, Phytotaxa 556(1). https://doi.org/10.11646/phytotaxa.556.1.3

McGlue MM, Ellis GS, Brannon MA, Latimer JC, Stone JR, Ivory SJ, Soreghan MJ, Scholz CA, 2022, sedimentary geochemistry of deepwater slope deposits in southern Lake Tanganyika (East Africa): effects of upwelling and minor lake level oscillations, Journal of Sedimentary Research.

Cohen AS, Campisano C, Arrowsmith R, Asrat A, Beck C, Behrensmeyer AK, Deino A, Deocampo D, Feibl C, Foerster V, Kingston J, Lamb H, Lowenstein T, Lupien R, Muiruri V, Olago D, Owen RB, Potts R, Russell

J, Schaebitz F, Stone JR, Trauth M, Yost C, HSPDP Team, 2022, Reconstructing the Environmental Context of Human Origins in East Africa through Scientific Drilling. Annual Review of Earth and Planetary Sciences.

Kamulali TM*, McGlue MM, Stone JR, Kimirei IA, Cohen AS, 2022, Paleoecological analysis of Holocene sediment cores from the southern basin of Lake Tanganyika: Implications for the future of the fishery in one of Africa’s largest lakes, Journal of Paleolimnology 67:17–34.

Obrist-Farner J, Brenner M, Stone JR, Wojewódka-Przybył M, Bauersachs T, Eckert A, Locmelis M, Curtis JH, Zimmerman SR, Correa-Metrio A, Schwark L, Duarte E, Schwalb A, Niewerth E, Gabriela Echeverría-Galindo P, and Pérez L, 2022, New estimates for the magnitude of the sea-level jump during the 8.2-ka event, Geology 50 (1): 86–90.

Streib LC*, Stone JR, Lyon EC, Ha HQ*, Yeager KM, Zimmerman S, McGlue MM, 2021, Anthropogenic climate change has altered lake state in the Sierra Nevada (California, USA), Global Change Biology 27(23):6059-6070. https://doi.org/10.1111/gcb.15843

Robakiewicz E, de Matos D, Stone JR, Junginger A, 2021, Hydrochemistry and diatom assemblages on the Humpata Plateau, southwestern Angola, Geosciences 11 (359) 1–21.

Power RC, Wittig R, Stone JR, Kupczik K, Schulz-Kornas E, 2021, The representativeness of the dental calculus dietary record: insights from Taï chimpanzee faecal phytoliths, Anthropological and Archaeololgical Sciences 13, 104. https://doi.org/10.1007/s12520-021-01342-z

Alverson AJ, Chafin TK, Jones KA, Manoylov K, Johnson H*, Julius ML, Nakov T, Ruck EC, Theriot EC, Yeager KM, Stone JR, 2021, Microbial biogeography through the lens of an invasive species: The recent introduction and spread of the freshwater diatom Discostella asterocostata in the United States, Biological Invasions 23:2191–2204. https://doi.org/10.1007/s10530-021-02497-5

Edlund MB, Burge DRL, Andresen NA, VanderMeulen DD, Stone JR, and Van de Vijver B, 2021, The genus Semiorbis (Eunotiaceae, Bacillariophyta) in North America, Diatom Research 36(1):37–48. DOI: 10.1080/0269249x.2021.1875053

Mohan J*, Saros JE, Stone JR, 2021, On the matter of phytoplankton: A novel method using 3D computer models to calculate biovolume of microorganisms, Limnology and Oceanography Methods 19(5): 331–339.

Chellman N, Pederson GT, Lee CM, McWethy DB, Puseman K, Stone JR, *Brown SR, McConnell JR, 2021, High elevation ice patch documents Holocene climate variability in the northern Rocky Mountains, Quaternary Science Advances 3: 100021. https://doi.org/10.1016/j.qsa.2020.100021

PhD Students & Candidates

hirak

Hirak Parikh

Pollution of Lake Coeur d'Alene 

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Sristika Adhikari

Holocene paleoecology of Lake Tanganyika 

jh

Justin Hardin

Holocene paleoecology of Lake Izabal 

MS Students

karlyn

Rorie Reisner

Reconstruction of zooplankton from Sierra Nevada lakes.

sww

Sydney Williams

Reconstructing lake history from Indiana coal pit lakes.

Undergraduate Researchers

patrick

Mahalia Patrick

Holocene paleoecology of Lake Amatitlán

karlyn

Kaya Tanner

Holocene paleoecology of Lake Chichoj

karlyn

Zoe Newbold

Diatoms of Indiana's northern coast.

Equipment

  • boat

    Limnologic Field Equipment

    · Coring Equipment: Livingstone/Bolivia and Griffith sediment corers with 10 (1.5 m) core rods, HTH surface sediment corer, 5 m portable modular coring platform.

    · Field boats: 5-person inflatable Saturn boat, 3-person inflatable Zodiak boat, aluminum 3-person johnboat.

    · Limnological Equipment: 1 research grade 20 micron mesh plankton net, 2 student plankton nets, YSI devices, digital depth finder, Secchi disks, 6 invertebrate stream nets, 5 portable battery-powered field microscopes.

  • karlyn

    Laboratory Equipment

    · Sample preparation: Fume hood, drying oven, centrifuge, sink with aspirator, cold room, freezer, refrigerator, hot plates, stirring plates, vortex, slide warmer.

    · Sample analysis Equipment: 3 research grade transmitted light microscopes (Leica DM2500 with DIC and phase contrast with a 5 megapixel camera), 1 Zeiss Primostar student research transmitted light microscope with 100-1000x magnification, 8 Olympus transmitted light microscopes with 100 - 1000x magnification, access to the ISU SEM lab (Tescan Vega 3 SEM, EDAX, sputter coater), research grade stereo microscope (Leica S9)

    · Library: extensive diatom, algal, and protozoan taxonomic libraries.